Merge branch 'master' of gitlab.mathematik.uni-stuttgart.de:seusdd/ldd-tpr-numerical-experiments

Two-phase-Two-phase/multi-patch/TP-TP-layered-soil-case-with-inner-patch/TP-TP-layered_soil_with_inner_patch-model-change-interface12.py

 #!/usr/bin/python3
-"""TP-TP layered soil with inner patch simulation.
-
-This program sets up an LDD simulation
+"""TP-TP layered soil with inner patch simulation, Copyright 2020, David Seus
+
+This program runs an LDD simulation for a layered soil substructuring with
+inner patch.
+This examples uses a model change at interface 12
+
+# LICENCE #####################################################################
+Copyright 2020, David Seus
+david.seus[at]ians.uni-stuttgart.de
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>.
+###############################################################################
 """
 import dolfin as df
 import sympy as sym

Two-phase-Two-phase/multi-patch/TP-TP-layered-soil-case-with-inner-patch/TP-TP-layered_soil_with_inner_patch-realistic-pure-dd.py

 #!/usr/bin/python3
-"""TP-TP layered soil with inner patch simulation.
-
-This program sets up an LDD simulation
+"""TP-TP layered soil with inner patch simulation, Copyright 2020, David Seus
+
+This program runs an LDD simulation for a layered soil substructuring with
+inner patch.
+This example assumes realistic parameters but remains pure dd
+
+# LICENCE #####################################################################
+Copyright 2020, David Seus
+david.seus[at]ians.uni-stuttgart.de
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>.
+###############################################################################
 """
 import dolfin as df
 import sympy as sym

Two-phase-Two-phase/multi-patch/TP-TP-layered-soil-case-with-inner-patch/TP-TP-layered_soil_with_inner_patch.py

 #!/usr/bin/python3
-"""TP-TP layered soil with inner patch simulation.
-
-This program sets up an LDD simulation
+"""TP-TP layered soil with inner patch simulation, Copyright 2020, David Seus
+
+This program runs an LDD simulation for a layered soil substructuring with
+inner patch.
+
+# LICENCE #####################################################################
+Copyright 2020, David Seus
+david.seus[at]ians.uni-stuttgart.de
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>.
+###############################################################################
 """
 import dolfin as df
 import sympy as sym

Two-phase-Two-phase/multi-patch/TP-TP-layered-soil-case-with-inner-patch/mesh_study/TP-TP-layered_soil_with_inner_patch-realistic-pure-dd.py

 #!/usr/bin/python3
-"""TP-TP layered soil with inner patch simulation.
-
-This program sets up an LDD simulation
+"""TP-TP layered soil with inner patch simulation, Copyright 2020, David Seus
+
+This program runs a mesh study for an LDD simulation for a layered soil
+substructuring with inner patch.
+This example assumes realistic parameters but remains pure dd and performs a
+mesh study.
+
+# LICENCE #####################################################################
+Copyright 2020, David Seus
+david.seus[at]ians.uni-stuttgart.de
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>.
+###############################################################################
 """
 import dolfin as df
 import sympy as sym

Two-phase-Two-phase/multi-patch/TP-TP-layered-soil-case-with-inner-patch/mesh_study/TP-TP-layered_soil_with_inner_patch_mesh_study.py

 #!/usr/bin/python3
-"""TP-TP layered soil with inner patch simulation.
-
-This program sets up an LDD simulation
+"""TP-TP layered soil with inner patch simulation, Copyright 2020, David Seus
+
+This program runs a mesh study LDD simulation for a layered soil substructuring
+with inner patch.
+This example assumes realistic parameters and performs a mesh study
+
+# LICENCE #####################################################################
+Copyright 2020, David Seus
+david.seus[at]ians.uni-stuttgart.de
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>.
+###############################################################################
 """
 import dolfin as df
 import sympy as sym
@@ -240,23 +259,6 @@ L = {
          'nonwetting': Lnw6}
 }
 
-
-# interface_num : lambda parameter for the L-scheme on that interface.
-# Note that interfaces are numbered starting from 0, because
-# adjacent_subdomains is a list and not a dict. Historic fuckup, I know
-# We have defined above as interfaces
-# # interface_vertices introduces a global numbering of interfaces.
-# interface_def_points = [interface12_vertices,
-#                         interface23_vertices,
-#                         interface24_vertices,
-#                         interface25_vertices,
-#                         interface34_vertices,
-#                         interface36_vertices,
-#                         interface45_vertices_a,
-#                         interface45_vertices_b,
-#                         interface46_vertices,
-#                         interface56_vertices,
-#                         ]
 lambda_param = {
     0: {'wetting': lambda12_w,
          'nonwetting': lambda12_nw},